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Associate Professor Nadeem Kaakoush

Associate Professor Nadeem Kaakoush

Associate Professor
Medicine & Health
School of Biomedical Sciences

Scientia Associate Professor leading the Host-Microbiome interactions group

I lead a team that investigates host-associated microbial communities in health and disease. Our team pioneered methods to manipulate these microbial communities to treat diseases and to promote health. I completed my doctoral studies in the Faculty of Medicine at UNSW in 2008 during which I was invited to expand my expertise at the Institut Pasteur in Paris, France. Following my doctoral studies, I worked as a Research Associate in the School of Biotechnology and Biomolecular Sciences, UNSW, where I investigated the role of mucosa-associated pathobionts in inflammatory bowel diseases. In 2011, I was awarded an NHMRC Early Career Fellowship (2011-2014) to study the role of the microbiota and its associated metabolome in IBD. In the latter stages of my fellowship, my interests expanded to the microbiome in upper gastrointestinal cancers, and in 2016, I was awarded a Career Development fellowship from the Cancer Institute NSW, and consequently, I relocated to the School of Medical Sciences. In 2019, I was appointed as a UNSW Scientia academic to expand my work on the microbiome, and to date, I have published >130 peer-reviewed outputs in the field of medical microbiology.

Location
Room 416, Level 4, Wallace Wurth Building
  • Book Chapters | 2015
    Kaakoush NO; Mitchell HM; Man SM, 2015, 'Chapter 67 Campylobacter', in Molecular Medical Microbiology, Elsevier, pp. 1187 - 1236,
    Book Chapters | 2014
    Kaakoush NO; Mitchell HM; Man SM, 2014, 'Campylobacter', in Molecular Medical Microbiology, pp. 1187 - 1236,
    Book Chapters | 2014
    Mitchell HM; Rocha GA; Kaakoush NO; O'Rourke JL; Dulciene MM, 2014, 'The Family Helicobacteraceae', in Rosenberg E; DeLong EF; Lory S; Stackebrandt E; Thompson F (ed.), The Prokaryotes, 4th Edition, Volume 10 Deltaproteobacteria and Epsilonproteobacteria, Springer-Verlag, Berlin Heidelberg
    Book Chapters | 2010
    Mitchell HM; Kaakoush NO; Sutton P, 2010, 'Extragastric manifestations of Helicobacter pylori infection', in Sutton P; Mitchell H (ed.), Helicobacter pylori in the 21st Century, CABI, Cambridge, MA, pp. 69 - 93,
  • Journal articles | 2024
    Benard M; de Goffau M; Blonk J; Hugenholtz F; van Buuren J; Paramsothy S; Kaakoush N; Borody T; Kamm M; Ponsioen C, 2024, 'P1205 Features of the gut microbiota that associate with clinical outcomes of fecal microbiota transplantation in Ulcerative Colitis: a systematic review and meta-analysis', Journal of Crohn's and Colitis, 18, pp. i2145 - i2146,
    Journal articles | 2024
    Bénard MV; de Goffau MC; Blonk J; Hugenholtz F; van Buuren J; Paramsothy S; Kaakoush NO; D'Haens GRAM; Borody TJ; Kamm MA; Ponsioen CY, 2024, 'Fecal Microbiota Transplantation Outcome and Gut Microbiota Composition in Ulcerative Colitis: A Systematic Review and Meta-Analysis.', Clin Gastroenterol Hepatol,
    Journal articles | 2024
    Chetwood JD; Paramsothy S; Haifer C; Borody TJ; Kamm MA; Leong RW; Kaakoush NO, 2024, 'Key metabolomic alterations are associated with ulcerative colitis disease state and activity: A validation analysis', Gut, 73, pp. 1392 - 1393,
    Journal articles | 2024
    Desai I; Wewege MA; Jones MD; Clifford BK; Pandit A; Kaakoush NO; Simar D; Hagstrom AD; Hagstrom M, 2024, 'The Effect of Creatine Supplementation on Resistance Training-Based Changes to Body Composition: A Systematic Review and Meta-analysis', Journal of Strength and Conditioning Research,
    Journal articles | 2024
    Hasebe K; Kendig MD; Kaakoush NO; Tajaddini A; Hesam-Shariati S; Westbrook F; Morris MJ, 2024, 'Impact of maternal obesogenic diet on maternal and offspring microbiome development', Obesity Research & Clinical Practice, 18, pp. S6 - S6,
    Journal articles | 2024
    Luu LDW; Pandey A; Paramsothy S; Ngo C; Castaño-Rodríguez N; Liu C; Kamm MA; Borody TJ; Man SM; Kaakoush NO, 2024, 'Profiling the colonic mucosal response to fecal microbiota transplantation identifies a role for GBP5 in colitis in humans and mice', Nature Communications, 15,
    Journal articles | 2024
    Majzoub ME; Luu LDW; Haifer C; Paramsothy S; Borody TJ; Leong RW; Thomas T; Kaakoush NO, 2024, 'Refining microbial community metabolic models derived from metagenomics using reference-based taxonomic profiling', mSystems, 9,
    Journal articles | 2024
    Majzoub ME; Paramsothy S; Haifer C; Parthasarathy R; Borody TJ; Leong RW; Kamm MA; Kaakoush NO, 2024, 'The phageome of patients with ulcerative colitis treated with donor fecal microbiota reveals markers associated with disease remission', Nature Communications, 15,
    Journal articles | 2024
    Pandey A; Shen C; Feng S; Tuipulotu DE; Ngo C; Liu C; Kurera M; Mathur A; Venkataraman S; Zhang J; Talaulikar D; Song R; Wong JJL; Teoh N; Kaakoush NO; Man SM, 2024, 'Ku70 senses cytosolic DNA and assembles a tumor-suppressive signalosome', Science Advances, 10,
    Journal articles | 2024
    Parthasarathy R; Wakefield D; Santiago FS; Kaakoush NO; Tedla N, 2024, 'Horizontal gene transfer and endogenous retroviruses as mechanisms for molecular mimicry', The Lancet Microbe, 5, pp. e4 - e5,
    Journal articles | 2024
    Shen C; Pandey A; Enosi Tuipulotu D; Mathur A; Liu L; Yang H; Adikari NK; Ngo C; Jing W; Feng S; Hao Y; Zhao A; Kirkby M; Kurera M; Zhang J; Venkataraman S; Liu C; Song R; Wong JJL; Schumann U; Natoli R; Wen J; Zhang L; Kaakoush NO; Man SM, 2024, 'Inflammasome protein scaffolds the DNA damage complex during tumor development', Nature Immunology, 25, pp. 2085 - 2096,
    Journal articles | 2024
    Wark G; Kaakoush NO; Samocha-Bonet D; Ghaly S; Danta M, 2024, 'Dietary Determinants of Metabolic and Gut Microbial Health in Patients with Inflammatory Bowel Disease', Nutrients, 16,
    Journal articles | 2023
    Clifford BK; Amorim N; Kaakoush N; Boysen L; Tedla N; Goldstein D; Hardeman E; Simar D, 2023, 'Irradiation-Induced Dysbiosis: The Compounding Effect ofHigh-Fat Diet on Metabolic and Immune Functions in Mice', International Journal of Molecular Sciences, 24, pp. 5631 - 5631,
    Journal articles | 2023
    Clifford BK; Kaakoush NO; Tedla N; Goldstein D; Simar D, 2023, 'The effect of exercise intensity on the inflammatory profile of cancer survivors: A randomised crossover study', European Journal of Clinical Investigation, 53, pp. e13984,
    Journal articles | 2023
    Enosi Tuipulotu D; Feng S; Pandey A; Zhao A; Ngo C; Mathur A; Lee J; Shen C; Fox D; Xue Y; Kay C; Kirkby M; Lo Pilato J; Kaakoush NO; Webb D; Rug M; Robertson AAB; Tessema MB; Pang S; Degrandi D; Pfeffer K; Augustyniak D; Blumenthal A; Miosge LA; Brüstle A; Yamamoto M; Reading PC; Burgio G; Man SM, 2023, 'Immunity against Moraxella catarrhalis requires guanylate-binding proteins and caspase-11-NLRP3 inflammasomes', EMBO Journal, 42,
    Journal articles | 2023
    Haifer C; Luu LDW; Paramsothy S; Borody TJ; Leong RW; Kaakoush NO, 2023, 'Microbial determinants of effective donors in faecal microbiota transplantation for UC', Gut, 72, pp. 90 - 100,
    Journal articles | 2023
    Kendig MD; Hasebe K; Tajaddini A; Kaakoush NO; Westbrook RF; Morris MJ, 2023, 'The Benefits of Switching to a Healthy Diet on Metabolic, Cognitive, and Gut Microbiome Parameters Are Preserved in Adult Rat Offspring of Mothers Fed a High-Fat, High-Sugar Diet', Molecular Nutrition and Food Research, 67,
    Journal articles | 2023
    Kendig MD; Leigh SJ; Hasebe K; Kaakoush NO; Westbrook RF; Morris MJ, 2023, 'Obesogenic Diet Cycling Produces Graded Effects on Cognition and Microbiota Composition in Rats', Molecular Nutrition and Food Research, 67,
    Journal articles | 2023
    Mathur A; Kay C; Xue Y; Pandey A; Lee J; Jing W; Enosi Tuipulotu D; Lo Pilato J; Feng S; Ngo C; Zhao A; Shen C; Rug M; Miosge LA; Atmosukarto II; Price JD; Ali SA; Gardiner EE; Robertson AAB; Awad MM; Lyras D; Kaakoush NO; Man SM, 2023, 'Clostridium perfringens virulence factors are nonredundant activators of the NLRP3 inflammasome', EMBO Reports, 24,
    Journal articles | 2023
    Parthasarathy R; Santiago F; McCluskey P; Kaakoush NO; Tedla N; Wakefield D, 2023, 'The microbiome in HLA-B27-associated disease: implications for acute anterior uveitis and recommendations for future studies', Trends in Microbiology, 31, pp. 142 - 158,
    Journal articles | 2023
    Shalaby N; Samocha-Bonet D; Kaakoush NO; Danta M, 2023, 'The Role of the Gastrointestinal Microbiome in Liver Disease', Pathogens, 12,
    Journal articles | 2022
    Don Wai Luu L; Kaakoush NO; Castaño-Rodríguez N, 2022, 'The role of ATG16L2 in autophagy and disease', Autophagy, 18, pp. 2537 - 2546,
    Journal articles | 2022
    Haifer C; Paramsothy S; Kaakoush NO; Leong RW, 2022, 'Oral faecal microbiota transplantation in ulcerative colitis – Authors' reply', The Lancet Gastroenterology and Hepatology, 7, pp. 286 - 287,
    Journal articles | 2022
    Haifer C; Paramsothy S; Kaakoush NO; Saikal A; Ghaly S; Yang T; Luu LDW; Borody TJ; Leong RW, 2022, 'Lyophilised oral faecal microbiota transplantation for ulcerative colitis (LOTUS): a randomised, double-blind, placebo-controlled trial', The Lancet Gastroenterology and Hepatology, 7, pp. 141 - 151,
    Journal articles | 2022
    Hasebe K; Kendig MD; Kaakoush NO; Tajaddini A; Westbrook RF; Morris MJ, 2022, 'The influence of maternal unhealthy diet on maturation of offspring gut microbiota in rat', Animal Microbiome, 4,
    Journal articles | 2022
    Jing W; Pilato JL; Kay C; Feng S; Tuipulotu DE; Mathur A; Shen C; Ngo C; Zhao A; Miosge LA; Ali SA; Gardiner EE; Awad MM; Lyras D; Robertson AAB; Kaakoush NO; Man SM, 2022, 'Clostridium septicum α-toxin activates the NLRP3 inflammasome by engaging GPI-anchored proteins', Science Immunology, 7,
    Journal articles | 2022
    Kaakoush NO; Olzomer EM; Kosasih M; Martin AR; Fargah F; Lambie N; Susic D; Hoehn KL; Farrell R; Byrne FL, 2022, 'Differences in the Active Endometrial Microbiota across Body Weight and Cancer in Humans and Mice', Cancers, 14, pp. 2141,
    Journal articles | 2022
    Lu LDW; Singh H; Castaño-Rodríguez N; Leach ST; Riordan SM; Tedla N; Krishnan U; Kaakoush NO, 2022, 'Changes to the upper gastrointestinal microbiotas of children with reflux oesophagitis and oesophageal metaplasia', Microbial Genomics, 8,
    Journal articles | 2022
    Podlesny D; Durdevic M; Paramsothy S; Kaakoush NO; Högenauer C; Gorkiewicz G; Walter J; Fricke WF, 2022, 'Identification of clinical and ecological determinants of strain engraftment after fecal microbiota transplantation using metagenomics', Cell Reports Medicine, 3,
    Journal articles | 2022
    Rodriguez Paris V; Wong XYD; Solon-Biet SM; Edwards MC; Aflatounian A; Gilchrist RB; Simpson SJ; Handelsman DJ; Kaakoush NO; Walters KA, 2022, 'The interplay between PCOS pathology and diet on gut microbiota in a mouse model', Gut Microbes, 14,
    Journal articles | 2021
    An H; Richardson A; Rajasekariah P; Zhong L; Fernando BSM; Macmillan A; Klotzsch E; Bryant K; Kaakoush NO; Tedla N, 2021, 'Nuclear Leukocyte Immunoglobulin-like Receptor A3 Is Monomeric and Is Involved in Multiple Layers of Regulated Gene Expression and Translation', Journal of Proteome Research, 20, pp. 3078 - 3089,
    Journal articles | 2021
    Capraro A; Wong S; Adhikari A; Allan K; Patel H; Zhong L; Raftery M; Jaffe A; Yeang M; Aggarwal A; Wu L; Pandzic E; Whan R; Turville S; Vittorio O; Bull R; Kaakoush N; Rawlinson W; Tedla N; Vafaee F; Waters S, 2021, 'Ageing impairs the airway epithelium defence response to SARS-CoV-2', ,
    Journal articles | 2021
    Deshpande NP; Riordan SM; Gorman CJ; Nielsen S; Russell TL; Correa-Ospina C; Fernando BSM; Waters SA; Castaño-Rodríguez N; Man SM; Tedla N; Wilkins MR; Kaakoush NO, 2021, 'Multi-omics of the esophageal microenvironment identifies signatures associated with progression of Barrett’s esophagus', Genome Medicine, 13, pp. 133,
    Journal articles | 2021
    Haifer C; Paramsothy S; Borody TJ; Clancy A; Leong RW; Kaakoush NO, 2021, 'Long-term bacterial and fungal dynamics following oral lyophilized fecal microbiota transplantation in clostridioides difficile infection', mSystems, 6,
    Journal articles | 2021
    Haifer C; Saikal A; Paramsothy R; Kaakoush NO; Leong RW; Borody TJ; Kamm MA; Paramsothy S, 2021, 'Response to faecal microbiota transplantation in ulcerative colitis is not sustained long term following induction therapy', GUT, 70, pp. 2210 - 2210,
    Journal articles | 2021
    Haifer C; Saikal A; Paramsothy R; Kaakoush NO; Leong RW; Borody TJ; Kamm MA; Paramsothy S, 2021, 'Response to faecal microbiota transplantation in ulcerative colitis is not sustained long term following induction therapy', Gut, 70, pp. 2210 - 2211,
    Journal articles | 2021
    Haifer C; Saikal A; Paramsothy S; Borody TJ; Ghaly DS; Kaakoush NO; Leong RW, 2021, '680 LYOPHILIZED ORALLY ADMINISTERED FECAL MICROBIOTA TRANSPLANTATION IN THE MANAGEMENT OF ULCERATIVE COLITIS (LOTUS STUDY) – RESULTS FROM THE INDUCTION PHASE OF A RANDOMIZED CONTROLLED TRIAL', Gastroenterology, 160, pp. S - 135,
    Journal articles | 2021
    Haifer C; Saikal A; Paramsothy S; Borody TJ; Ghaly S; Kaakoush NO; Leong R, 2021, 'Lyophilised orally administered faecal microbiota transplantation for Active Ulcerative Colitis (LOTUS study)', JOURNAL OF CROHNS & COLITIS, 15, pp. S029 - S029,
    Journal articles | 2021
    Podlesny D; Durdevic M; Paramsothy S; Kaakoush NO; Högenauer C; Gorkiewicz G; Walter J; Fricke WF, 2021, 'Intraspecies strain exclusion, antibiotic pretreatment, and donor selection control microbiota engraftment after fecal transplantation', ,
    Journal articles | 2020
    Britton GJ; Contijoch EJ; Spindler MP; Aggarwala V; Dogan B; Bongers G; Mateo LS; Baltus A; Das A; Gevers D; Borody TJ; Kaakoush NO; Kamm MA; Mitchell H; Paramsothy S; Clemente JC; Colombel JF; Simpson KW; Dubinsky MC; Grinspan A; Faith JJ, 2020, 'Defined microbiota transplant restores Th17/RORγt+ regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas', Proceedings of the National Academy of Sciences of the United States of America, 117, pp. 21536 - 21545,
    Journal articles | 2020
    Castaño-Rodríguez N; Paramsothy S; Kaakoush NO, 2020, 'Promise of Fecal Microbiota Transplantation Therapy in Pouchitis', Digestive Diseases and Sciences, 65, pp. 1107 - 1110,
    Journal articles | 2020
    Fox D; Mathur A; Xue Y; Liu Y; Tan WH; Feng S; Pandey A; Ngo C; Hayward JA; Atmosukarto II; Price JD; Johnson MD; Jessberger N; Robertson AAB; Burgio G; Tscharke DC; Fox EM; Leyton DL; Kaakoush NO; Märtlbauer E; Leppla SH; Man SM, 2020, 'Bacillus cereus non-haemolytic enterotoxin activates the NLRP3 inflammasome', Nature Communications, 11,
    Journal articles | 2020
    Ghaly S; Kaakoush NO; Hart PH, 2020, 'Effects of UVR exposure on the gut microbiota of mice and humans', Photochemical and Photobiological Sciences, 19, pp. 20 - 28,
    Journal articles | 2020
    Haifer C; Paramsothy S; Borody TJ; Clancy A; Kingston-Smith H; Leong RW; Kaakoush NO, 2020, 'Mo1929 ORALLY ADMINISTERED LYOPHILIZED FECAL MICROBIOTA TRANSPLANTATION IN CLOSTRIDIOIDES DIFFICILE INFECTION - LONG TERM CLINICAL AND MICROBIOLOGICAL OUTCOMES', Gastroenterology, 158, pp. S - 981,
    Journal articles | 2020
    Kaakoush NO, 2020, 'Fecal transplants as a microbiome-based therapeutic', Current Opinion in Microbiology, 56, pp. 16 - 23,
    Journal articles | 2020
    Kaakoush NO, 2020, 'Sutterella Species, IgA-degrading Bacteria in Ulcerative Colitis', Trends in Microbiology, 28, pp. 519 - 522,
    Journal articles | 2020
    Krishnan U; Singh H; Tedla N; Leach ST; Kaakoush NO, 2020, 'Presence of gastric pepsinogen in the trachea is associated with altered inflammation and microbial composition', Infection and Immunity, 88,
    Journal articles | 2020
    Leigh SJ; Kaakoush NO; Bertoldo MJ; Westbrook RF; Morris MJ, 2020, 'Intermittent cafeteria diet identifies fecal microbiome changes as a predictor of spatial recognition memory impairment in female rats', Translational Psychiatry, 10,
    Journal articles | 2020
    Leigh SJ; Kaakoush NO; Escorihuela RM; Westbrook RF; Morris MJ, 2020, 'Treadmill exercise has minimal impact on obesogenic diet-related gut microbiome changes but alters adipose and hypothalamic gene expression in rats', Nutrition and Metabolism, 17,
    Journal articles | 2020
    Leigh SJ; Kaakoush NO; Westbrook RF; Morris MJ, 2020, 'Minocycline-induced microbiome alterations predict cafeteria diet-induced spatial recognition memory impairments in rats', Translational Psychiatry, 10,
    Journal articles | 2020
    Leonardi I; Paramsothy S; Doron I; Semon A; Kaakoush NO; Clemente JC; Faith JJ; Borody TJ; Mitchell HM; Colombel JF; Kamm MA; Iliev ID, 2020, 'Fungal Trans-kingdom Dynamics Linked to Responsiveness to Fecal Microbiota Transplantation (FMT) Therapy in Ulcerative Colitis', Cell Host and Microbe, 27, pp. 823 - 829.e3,
    Journal articles | 2020
    Paris VR; Kaakoush NO; Solon-Biet SM; Edwards MC; Ledger WL; Gilchrist RB; Simpson SJ; Handelsman DJ; Walters KA, 2020, 'MON-022 Dissecting the Interplay Between Diet and PCOS Pathology on Gut Microbiota in a PCOS Mouse Model', Journal of the Endocrine Society, 4,
    Journal articles | 2020
    Wasinger VC; Lu K; Yau YY; Nash J; Lee J; Chang J; Paramsothy S; Kaakoush NO; Mitchell HM; Leong RWL, 2020, 'Spp24 is associated with endocytic signalling, lipid metabolism, and discrimination of tissue integrity for ‘leaky-gut’ in inflammatory bowel disease', Scientific Reports, 10,
    Journal articles | 2019
    Coffey MJ; Nielsen S; Wemheuer B; Kaakoush NO; Garg M; Needham B; Pickford R; Jaffe A; Thomas T; Ooi CY, 2019, 'Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis', Scientific Reports, 9, pp. 18593,
    Journal articles | 2019
    Krishnan U; Singh H; Kaakoush N; Leach S, 2019, 'DOZ047.18: Diagnosing reflux aspiration in esophageal atresia: role of microbiome and pepsin', Diseases of the Esophagus, 32,
    Journal articles | 2019
    Krishnan U; Singh H; Kaakoush N, 2019, 'DOZ047.04: Upper gastrointestinal microbiome in esophageal atresia', Diseases of the Esophagus, 32,
    Journal articles | 2019
    Leong RWL; Kaakoush NO; Yau YY; Wasinger VC, 2019, 'Editorial: metabolomic biomarkers for colorectal adenocarcinoma and in the differentiation between irritable bowel syndrome and ulcerative colitis in clinical remission— confounded by the gut microbiome?', Alimentary Pharmacology and Therapeutics, 49, pp. 1086 - 1087,
    Journal articles | 2019
    Mathur A; Feng S; Hayward JA; Ngo C; Fox D; Atmosukarto II; Price JD; Schauer K; Märtlbauer E; Robertson AAB; Burgio G; Fox EM; Leppla SH; Kaakoush NO; Man SM, 2019, 'A multicomponent toxin from Bacillus cereus incites inflammation and shapes host outcome via the NLRP3 inflammasome', Nature Microbiology, 4, pp. 362 - 374,
    Journal articles | 2019
    Ong KL; Hui N; Januszewski AS; Kaakoush NO; Xu A; Fayyad R; DeMicco DA; Jenkins AJ; Keech AC; Waters DD; Barter PJ; Rye KA, 2019, 'High plasma FGF21 levels predicts major cardiovascular events in patients treated with atorvastatin (from the Treating to New Targets [TNT] Study)', Metabolism: Clinical and Experimental, 93, pp. 93 - 99,
    Journal articles | 2019
    Paramsothy S; Kaakoush NO, 2019, 'Reply', Gastroenterology, 157, pp. 1165 - 1166,
    Journal articles | 2019
    Paramsothy S; Nielsen S; Kamm MA; Deshpande NP; Faith JJ; Clemente JC; Paramsothy R; Walsh AJ; van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Lin E; Borody TJ; Wilkins MR; Colombel JF; Mitchell HM; Kaakoush NO, 2019, 'Specific Bacteria and Metabolites Associated With Response to Fecal Microbiota Transplantation in Patients With Ulcerative Colitis', Gastroenterology, 156, pp. 1440 - 1454.e2,
    Journal articles | 2019
    Pinget G; Tan J; Janac B; Kaakoush NO; Angelatos AS; O'Sullivan J; Koay YC; Sierro F; Davis J; Divakarla SK; Khanal D; Moore RJ; Stanley D; Chrzanowski W; Macia L, 2019, 'Impact of the food additive titanium dioxide (e171) on gut microbiota-host interaction', Frontiers in Nutrition, 6,
    Journal articles | 2019
    Pinget G; Tan J; Janac B; Kaakoush NO; Angelatos AS; O’sullivan J; Koay YC; Sierro F; Davis J; Divakarla SK; Khanal D; Moore RJ; Stanley D; Chrzanowski W; Macia L, 2019, 'Corrigendum: Impact of the food additive titanium dioxide (e171) on gut microbiota-host interaction (Front. Nutr., (2019), 6, 10.3389/fnut.2019.00057)', Frontiers in Nutrition, 6,
    Journal articles | 2019
    Simovic I; Castaño-Rodríguez N; Kaakoush NO, 2019, 'OPCML: A Promising Biomarker and Therapeutic Avenue', Trends in Cancer, 5, pp. 463 - 466,
    Journal articles | 2019
    Vinasco K; Mitchell HM; Kaakoush NO; Castaño-Rodríguez N, 2019, 'Microbial carcinogenesis: Lactic acid bacteria in gastric cancer', Biochimica et Biophysica Acta - Reviews on Cancer, 1872, pp. 188309,
    Journal articles | 2018
    Beilharz JE; Kaakoush NO; Maniam J; Morris MJ, 2018, 'Cafeteria diet and probiotic therapy: Cross talk among memory, neuroplasticity, serotonin receptors and gut microbiota in the rat', Molecular Psychiatry, 23, pp. 351 - 361,
    Journal articles | 2018
    Bhagavata Srinivasan SP; Raipuria M; Bahari H; Kaakoush NO, 2018, 'Impacts of Diet and Exercise on Maternal Gut Microbiota Are Transferred to Offspring', Frontiers in Endocrinology, 9,
    Journal articles | 2018
    Castaño-Rodríguez N; Popple GL; Porras-Hurtado GL; Cardona-Deazza JL; Montoya-Martinez JJ; Cadavid-Velez AJ; Toro-Hidalgo HW; Cobo-Alvarado AR; Del Socorro Hincapié-Rincón O; Riordan SM; Kaakoush NO, 2018, 'OPCML is hypermethylated in a subset of patients with metaplastic changes in their esophagus', Biomarker Research, 6, pp. 35,
    Journal articles | 2018
    Castaño-Rodríguez N; Underwood AP; Merif J; Riordan SM; Rawlinson WD; Mitchell HM; Kaakoush NO, 2018, 'Gut microbiome analysis identifies potential etiological factors in acute gastroenteritis', Infection and Immunity, 86, pp. 10.1128/iai.00060 - 10.1128/iai.00018,
    Journal articles | 2018
    Deshpande NP; Riordan SM; Castaño-Rodríguez N; Wilkins MR; Kaakoush NO, 2018, 'Signatures within the esophageal microbiome are associated with host genetics, age, and disease', Microbiome, 6, pp. 227,
    Journal articles | 2018
    Ghaly S; Kaakoush NO; Lloyd F; Gordon L; Forest C; Lawrance IC; Hart PH, 2018, 'Ultraviolet irradiation of skin alters the faecal microbiome independently of vitamin D in mice', Nutrients, 10,
    Journal articles | 2018
    Ghaly S; Kaakoush NO; Lloyd F; McGonigle T; Mok D; Baird A; Klopcic B; Gordon L; Gorman S; Forest C; Bouillon R; Lawrance IC; Hart PH, 2018, 'High Dose Vitamin D supplementation alters faecal microbiome and predisposes mice to more severe colitis', Scientific Reports, 8,
    Journal articles | 2018
    Kaakoush NO, 2018, 'Microbiome and esophageal adenocarcinoma—letter', Cancer Research, 78, pp. 1574,
    Journal articles | 2018
    Paramsothy S; Kamm M; Nielsen S; Deshpande N; Faith J; Clemente J; Paramsothy R; Walsh A; van den Bogaerde J; Samuel D; Leong R; Connor S; Ng W; Lin E; Wilkins M; Colombel J-F; Borody T; Mitchell H; Kaakoush N, 2018, 'OP019 In faecal microbiota transplantation (FMT) for ulcerative colitis, fusobacterium is associated with lack of remission, while metabolic shifts to starch degradation and short-chain fatty acid production are associated with remission (FOCUS study)', Journal of Crohn's and Colitis, 12, pp. S013 - S014,
    Journal articles | 2018
    Paramsothy S; Kamm MA; Nielsen S; Deshpande N; Faith J; Clemente JC; Paramsothy R; Walsh A; van den Bogaerde J; Samuel D; Leong RW; Connor SJ; Ng WSW; Lin E; Wilkins M; Colombel JF; Borody TJ; Mitchell HM; Kaakoush NO, 2018, '130 - In Fecal Microbiota Transplantation (FMT) for Ulcerative Colitis, Fusobacterium is Associated with Lack of Remission, while Metabolic Shifts to Starch Degradation and Short Chain Fatty Acid Production are Associated with Remission – Results from the Randomized Controlled Focus Study', Gastroenterology, 154, pp. S - 35,
    Journal articles | 2018
    Purcell RV; Kaakoush NO; Mitchell HM; Pearson JF; Keenan JI, 2018, 'Gastrointestinal Pathobionts in Pediatric Crohn's Disease Patients', International Journal of Microbiology, 2018,
    Journal articles | 2017
    Castanõ-Rodríguez N; Kaakoush NO; Lee WS; Mitchell HM; Castano Rodriguez N, 2017, 'Dual role of Helicobacter and Campylobacter species in IBD: A systematic review and meta-analysis', Gut, 66, pp. 235 - 249,
    Journal articles | 2017
    Castaño-Rodríguez N; Goh KL; Fock KM; Mitchell HM; Kaakoush NO, 2017, 'Dysbiosis of the microbiome in gastric carcinogenesis', Scientific Reports, 7, pp. 15957,
    Journal articles | 2017
    Castaño-Rodríguez N; Mitchell HM; Kaakoush NO, 2017, 'NAFLD, Helicobacter species and the intestinal microbiome', Best Practice and Research: Clinical Gastroenterology, 31, pp. 657 - 668,
    Journal articles | 2017
    Kaakoush NO; Lecomte V; Maloney CA; Morris MJ, 2017, 'Cross-talk among metabolic parameters, esophageal microbiota, and host gene expression following chronic exposure to an obesogenic diet', Scientific Reports, 7, pp. 45753,
    Journal articles | 2017
    Kaakoush NO; Martire SI; Raipuria M; Mitchell HM; Nielsen S; Westbrook RF; Morris MJ, 2017, 'Alternating or continuous exposure to cafeteria diet leads to similar shifts in gut microbiota compared to chow diet', Molecular Nutrition and Food Research, 61,
    Journal articles | 2017
    Kaakoush NO; Martire SI; Raipuria M; Mitchell HM; Nielsen S; Westbrook RF; Morris MJ, 2017, 'Front cover: Alternating or continuous exposure to cafeteria diet leads to similar shifts in gut microbiota compared to chow diet', Molecular Nutrition & Food Research, 61,
    Journal articles | 2017
    Kaakoush NO; Morris MJ, 2017, 'More Flavor for Flavonoid-Based Interventions?', Trends in Molecular Medicine, 23, pp. 293 - 295,
    Journal articles | 2017
    Paramsothy S; Kamm MA; Kaakoush NO; Walsh AJ; van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Paramsothy R; Xuan W; Lin E; Mitchell HM; Borody TJ, 2017, 'Multidonor intensive faecal microbiota transplantation for active ulcerative colitis: a randomised placebo-controlled trial', The Lancet, 389, pp. 1218 - 1228,
    Journal articles | 2017
    Paramsothy S; Paramsothy R; Kamm M; Kaakoush N; Mitchell H; Rubin D; Castaño-Rodríguez N, 2017, 'P589 Faecal microbiota transplantation for inflammatory bowel disease: a systematic review and meta-analysis.', J Crohns Colitis, 11, pp. S380 - S381,
    Journal articles | 2017
    Paramsothy S; Paramsothy R; Rubin DT; Kamm MA; Kaakoush NO; Mitchell HM; Castaño-Rodríguez N, 2017, 'Faecal microbiota transplantation for inflammatory bowel disease: A systematic review and meta-analysis', Journal of Crohn's and Colitis, 11, pp. 1180 - 1199,
    Journal articles | 2016
    Beilharz JE; Kaakoush NO; Maniam J; Morris MJ, 2016, 'The effect of short-term exposure to energy-matched diets enriched in fat or sugar on memory, gut microbiota and markers of brain inflammation and plasticity', Brain, Behavior, and Immunity, 57, pp. 304 - 313,
    Journal articles | 2016
    Deshpande NP; Wilkins MR; Castaño-Rodríguez N; Bainbridge E; Sodhi N; Riordan SM; Mitchell HM; Kaakoush NO, 2016, 'Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells', Scientific Reports, 6, pp. 34288,
    Journal articles | 2016
    Kaakoush NO; Day AS; Leach ST; Lemberg DA; Mitchell HM, 2016, 'Reduction in Gut Microbial Diversity as a Mechanism of Action of Exclusive Enteral Nutrition', American Journal of Gastroenterology, 111, pp. 1033,
    Journal articles | 2016
    Kaakoush NO; Morris MJ, 2016, 'The oesophageal microbiome: An unexplored link in obesity-associated oesophageal adenocarcinoma', FEMS Microbiology Ecology, 92,
    Journal articles | 2016
    Kaakoush NO; Pickford R; Jaffe A; Ooi CY, 2016, 'Is there a role for stool metabolomics in cystic fibrosis?', Pediatrics International, 58, pp. 808 - 811,
    Journal articles | 2016
    Kaakoush NO; Thomas DS; Ruzayqat MM; Lynch D; Leach ST; Lemberg DA; Day AS; Mitchell HM, 2016, 'Campylobacter concisus utilizes blood but not short chain fatty acids despite showing associations with firmicutes taxa', Microbiology (United Kingdom), 162, pp. 1388 - 1397,
    Journal articles | 2016
    Klionsky DJ; Abdelmohsen K; Abe A; Abedin MJ; Abeliovich H; Arozena AA; Adachi H; Adams CM; Adams PD; Adeli K; Adhihetty PJ; Adler SG; Agam G; Agarwal R; Aghi MK; Agnello M; Agostinis P; Aguilar PV; Aguirre-Ghiso J; Airoldi EM; Ait-Si-Ali S; Akematsu T; Akporiaye ET; Al-Rubeai M; Albaiceta GM; Albanese C; Albani D; Albert ML; Aldudo J; Algül H; Alirezaei M; Alloza I; Almasan A; Almonte-Beceril M; Alnemri ES; Alonso C; Altan-Bonnet N; Altieri DC; Alvarez S; Alvarez-Erviti L; Alves S; Amadoro G; Amano A; Amantini C; Ambrosio S; Amelio I; Amer AO; Amessou M; Amon A; An Z; Anania FA; Andersen SU; Andley UP; Andreadi CK; Andrieu-Abadie N; Anel A; Ann DK; Anoopkumar-Dukie S; Antonioli M; Aoki H; Apostolova N; Aquila S; Aquilano K; Araki K; Arama E; Aranda A; Araya J; Arcaro A; Arias E; Arimoto H; Ariosa AR; Armstrong JL; Arnould T; Arsov I; Asanuma K; Askanas V; Asselin E; Atarashi R; Atherton SS; Atkin JD; Attardi LD; Auberger P; Auburger G; Aurelian L; Autelli R; Avagliano L; Avantaggiati ML; Avrahami L; Azad N; Awale S; Bachetti T; Backer JM; Bae DH; Bae JS; Bae ON; Bae SH; Baehrecke EH; Baek SH; Baghdiguian S; Bagniewska-Zadworna A, 2016, 'Erratum to: Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) (Autophagy, 12, 1, 1-222, 10.1080/15548627.2015.1100356', Autophagy, 12, pp. 443,
    Journal articles | 2016
    Klionsky DJ; Abdelmohsen K; Abe A; Abedin MJ; Abeliovich H; Arozena AA; Adachi H; Adams CM; Adams PD; Adeli K; Adhihetty PJ; Adler SG; Agam G; Agarwal R; Aghi MK; Agnello M; Agostinis P; Aguilar PV; Aguirre-Ghiso J; Airoldi EM; Ait-Si-Ali S; Akematsu T; Akporiaye ET; Al-Rubeai M; Albaiceta GM; Albanese C; Albani D; Albert ML; Aldudo J; Algül H; Alirezaei M; Alloza I; Almasan A; Almonte-Beceril M; Alnemri ES; Alonso C; Altan-Bonnet N; Altieri DC; Alvarez S; Alvarez-Erviti L; Alves S; Amadoro G; Amano A; Amantini C; Ambrosio S; Amelio I; Amer AO; Amessou M; Amon A; An Z; Anania FA; Andersen SU; Andley UP; Andreadi CK; Andrieu-Abadie N; Anel A; Ann DK; Anoopkumar-Dukie S; Antonioli M; Aoki H; Apostolova N; Aquila S; Aquilano K; Araki K; Arama E; Aranda A; Araya J; Arcaro A; Arias E; Arimoto H; Ariosa AR; Armstrong JL; Arnould T; Arsov I; Asanuma K; Askanas V; Asselin E; Atarashi R; Atherton SS; Atkin JD; Attardi LD; Auberger P; Auburger G; Aurelian L; Autelli R; Avagliano L; Avantaggiati ML; Avrahami L; Azad N; Awale S; Bachetti T; Backer JM; Bae DH; Bae JS; Bae ON; Bae SH; Baehrecke EH; Baek SH; Baghdiguian S; Bagniewska-Zadworna A, 2016, 'Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)', Autophagy, 12, pp. 1 - 222,
    Journal articles | 2016
    Mendz GL; Kaakoush NO; Quinlivan JA, 2016, 'New techniques to characterise the vaginal microbiome in pregnancy', AIMS Microbiology, 2, pp. 55 - 68,
    Journal articles | 2016
    Nielsen HL; Kaakoush NO; Mitchell HM; Nielsen H, 2016, 'Immunoglobulin G response in patients with Campylobacter concisus diarrhea', Diagnostic Microbiology and Infectious Disease, 84, pp. 151 - 154,
    Journal articles | 2016
    Underwood AP; Kaakoush NO; Sodhi N; Merif J; Lee WS; Riordan SM; Rawlinson WD; Mitchell HM, 2016, 'Campylobacter concisus pathotypes are present at significant levels in patients with gastroenteritis', Journal of Medical Microbiology, 65, pp. 219 - 226,
    Journal articles | 2015
    Castano Rodriguez N; Kaakoush N; Goh K; Fock K; Mitchell H, 2015, 'Correction: The NOD-Like Receptor Signalling Pathway in Helicobacter pylori Infection and Related Gastric Cancer: A Case-Control Study and Gene Expression Analyses', PLOS ONE, 10, pp. e0117870 - e0117870,
    Journal articles | 2015
    Castaño-Rodríguez N; Kaakoush NO; Goh KL; Fock KM; Mitchell HM, 2015, 'Autophagy in Helicobacter pylori Infection and Related Gastric Cancer', Helicobacter, 20, pp. 353 - 369,
    Journal articles | 2015
    Deshpande NP; Wilkins MR; Mitchell HM; Kaakoush NO, 2015, 'Novel genetic markers define a subgroup of pathogenic Escherichia coli strains belonging to the B2 phylogenetic group', FEMS Microbiology Letters, 362,
    Journal articles | 2015
    Kaakoush NO; Castaño-Rodríguez N; Day AS; Lemberg DA; Leac ST; Mitchell HM, 2015, 'Faecal levels of zonula occludens toxin in paediatric patients with crohn’s disease and their association with the intestinal microbiota', Journal of Medical Microbiology, 64, pp. 303 - 306,
    Journal articles | 2015
    Kaakoush NO; Castaño-Rodríguez N; Man SM; Mitchell HM, 2015, 'Is Campylobacter to esophageal adenocarcinoma as Helicobacter is to gastric adenocarcinoma?', Trends in Microbiology, 23, pp. 455 - 462,
    Journal articles | 2015
    Kaakoush NO; Castaño-Rodríguez N; Mitchell HM; Man SM, 2015, 'Global epidemiology of campylobacter infection', Clinical Microbiology Reviews, 28, pp. 687 - 720,
    Journal articles | 2015
    Kaakoush NO; Day AS; Leach ST; Lemberg DA; Nielsen S; Mitchell HM, 2015, 'Effect of exclusive enteral nutrition on the microbiota of children with newly diagnosed Crohn's disease', Clinical and Translational Gastroenterology, 6,
    Journal articles | 2015
    Kaakoush NO; Deshpande NP; Man SM; Burgos-Portugal JA; Khattak FA; Raftery MJ; Wilkins MR; Mitchell HM, 2015, 'Transcriptomic and proteomic analyses reveal key innate immune signatures in the host response to the gastrointestinal pathogen Campylobacter concisus', Infection and Immunity, 83, pp. 832 - 845,
    Journal articles | 2015
    Kaakoush NO, 2015, 'Insights into the role of Erysipelotrichaceae in the human host', Frontiers in Cellular and Infection Microbiology, 5,
    Journal articles | 2015
    Nielsen HL; Kaakoush NO; Mitchell HM; Nielsen H, 2015, 'Immunoglobulin G response in patients with Campylobacter concisus diarrhea', Diagnostic Microbiology and Infectious Disease,
    Journal articles | 2015
    Paramsothy S; Borody TJ; Lin E; Finlayson S; Walsh AJ; Samuel D; Van Den Bogaerde J; Leong RWL; Connor S; Ng W; Mitchell HM; Kaakoush N; Kamm MA, 2015, 'Donor recruitment for fecal microbiota transplantation', Inflammatory Bowel Diseases, 21, pp. 1600 - 1606,
    Journal articles | 2015
    Paramsothy S; Walsh AJ; Borody T; Samuel D; Van Den Bogaerde J; Leong RWL; Connor S; Ng W; Mitchell HM; Kaakoush NO; Kamm MA, 2015, 'Gastroenterologist perceptions of faecal microbiota transplantation', World Journal of Gastroenterology, 21, pp. 10907 - 10914,
    Journal articles | 2014
    Burgos-Portugal JA; Mitchell HM; Castaño-Rodríguez N; Kaakoush NO, 2014, 'The role of autophagy in the intracellular survival of Campylobacter concisus', FEBS Open Bio, 4, pp. 301 - 309,
    Journal articles | 2014
    Castaño-Rodríguez N; Kaakoush NO; Goh KL; Fock KM; Mitchell HM, 2014, 'The NOD-like receptor signalling pathway in Helicobacter pylori infection and related gastric cancer: A case-control study and gene expression analyses', PLoS ONE, 9,
    Journal articles | 2014
    Castaño-Rodríguez N; Kaakoush NO; Mitchell HM, 2014, 'Pattern-recognition receptors and gastric cancer', Frontiers in Immunology, 5, pp. 336,
    Journal articles | 2014
    Castaño-Rodríguez N; Kaakoush NO; Pardo AL; Goh KL; Fock KM; Mitchell HM, 2014, 'Genetic polymorphisms in the Toll-like receptor signalling pathway in Helicobacter pylori infection and related gastric cancer', Human Immunology, 75, pp. 808 - 815,
    Journal articles | 2014
    Kaakoush NO; Mitchell HM; Man SM, 2014, 'Role of emerging campylobacter species in inflammatory bowel diseases', Inflammatory Bowel Diseases, 20, pp. 2189 - 2197,
    Journal articles | 2014
    Kaakoush NO; Sodhi N; Chenu JW; Cox JM; Riordan SM; Mitchell HM, 2014, 'The interplay between Campylobacter and Helicobacter species and other gastrointestinal microbiota of commercial broiler chickens', Gut Pathogens, 6,
    Journal articles | 2014
    Lecomte V; Kaakoush NO; Maloney CA; Raipuria M; Huinao KD; Mitchell HM; Morris MJ, 2014, 'Changes in Gut Microbiota in Rats Fed a High Fat Diet Correlate with Obesity-Associated Metabolic Parameters.', PLoS One, 10, pp. e0126931,
    Journal articles | 2014
    Mendz GL; Petersen R; Quinlivan JA; Kaakoush NO, 2014, 'Potential involvement of Campylobacter curvus and Haemophilus parainfluenzae in preterm birth', BMJ Case Reports, 2014,
    Journal articles | 2014
    Pang CNI; Tay AP; Aya C; Twine NA; Harkness L; Hart-Smith G; Chia SZ; Chen Z; Deshpande NP; Kaakoush NO; Mitchell HM; Kassem M; Wilkins MR, 2014, 'Tools to covisualize and coanalyze proteomic data with genomes and transcriptomes: Validation of genes and Alternative mRNA splicing', Journal of Proteome Research, 13, pp. 84 - 98,
    Journal articles | 2014
    Quinlivan J; Kaakoush N; Mendz G, 2014, 'Acinetobacter Species Associated with Spontaneous Preterm Birth and Histological Chorioamnionitis', British Journal of Medicine and Medical Research, 4, pp. 5293 - 5297,
    Journal articles | 2013
    Castaño-Rodríguez N; Kaakoush NO; Goh KL; Fock KM; Mitchell HM, 2013, 'The Role of TLR2, TLR4 and CD14 Genetic Polymorphisms in Gastric Carcinogenesis: A Case-Control Study and Meta-Analysis', PLoS ONE, 8, pp. e60327,
    Journal articles | 2013
    Deshpande NP; Kaakoush NO; Wilkins MR; Mitchell HM, 2013, 'Comparative genomics of Campylobacter concisus isolates reveals genetic diversity and provides insights into disease association', BMC Genomics, 14,
    Journal articles | 2013
    Kaakoush NO; Castaño-Rodríguez N; Day AS; Lemberg DA; Leach ST; Mitchell HM, 2013, 'Campylobacter concisus and exotoxin 9 levels in paediatric patients with Crohn's disease and their association with the intestinal microbiota', Journal of Medical Microbiology, 63, pp. 99 - 105,
    Journal articles | 2013
    Kaakoush NO; Man SM; Mitchell HM, 2013, 'Functional relationship between Campylobacter concisus and the stomach ecosystem in health and disease', ISME Journal, 7, pp. 2245 - 2247,
    Journal articles | 2013
    Kaakoush NO; Mitchell HM, 2013, 'Do type VI secretion systems translocate more than just proteins?', Helicobacter, 18, pp. 242 - 243,
    Journal articles | 2013
    Kaakoush NO; Sirianni A; Raftery MJ; Mitchell HM, 2013, 'The Secretome of Helicobacter Trogontum', Helicobacter, 18, pp. 316 - 320,
    Journal articles | 2013
    Mendz GL; Kaakoush NO; Quinlivan JA, 2013, 'Bacterial aetiological agents of intra-amniotic infections and preterm birth in pregnant women', Frontiers in Cellular and Infection Microbiology, 4, pp. 1,
    Journal articles | 2013
    Mendz GL; Kaakoush NO; Quinlivan JA, 2013, 'Bacterial aetiological agents of intra-amniotic infections and preterm birth in pregnant women', Frontiers in Cellular and Infection Microbiology, 4,
    Journal articles | 2013
    Nahidi L; Leach ST; Mitchell HM; Kaakoush NO; Lemberg DA; Munday J; Huinao K; Day AS, 2013, 'Su2016 Nutritional Therapy Modulates Inflammation and Improves Altered Barrier Function in a Mouse Model of Colitis', Gastroenterology, 144, pp. S - 532,
    Journal articles | 2013
    Nahidi L; Leach ST; Mitchell HM; Kaakoush NO; Lemberg DA; Munday JS; Huinao K; Day AS, 2013, 'Inflammatory bowel disease therapies and gut function in a colitis mouse model', BioMed Research International, 2013,
    Journal articles | 2013
    Nahidi L; Leach ST; Mitchell HM; Kaakoush NO; Lemberg DA; Munday JS; Huinao K; Day AS, 2013, 'The effect of nutritional and non-nutritional therapies on gut barrier function and mucosal healing in a colitis mouse model', JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, 28, pp. 16 - 16,
    Journal articles | 2013
    Rehvathy V; Tan MH; Gunaletchumy SP; Teh X; Wang S; Baybayan P; Singh S; Ashby M; Kaakoush NO; Mitchell HM; Croft LJ; Goh KL; Loke MF; Vadivelu J, 2013, 'Multiple genome sequences of Helicobacter pylori strains of diverse disease and antibiotic resistance backgrounds from Malaysia', Genome Announcements, 1,
    Journal articles | 2013
    Rehvathy V; Tan MH; Gunaletchumya SP; Teh X; Wang X; Baybayan P; Singh S; Ashby M; Kaakoush NO; Mitchell HM; Croft LJ; Goh KL; Loke MF; Vadivelua J, 2013, 'Multiple Genome Sequences of Helicobacter pylori Strains of Diverse Disease and Antibiotic Resistance Backgrounds from Malaysia', Genome Announcements, 1, pp. e00687-13,
    Journal articles | 2013
    Sirianni A; Kaakoush NO; Raftery MJ; Mitchell HM, 2013, 'The pathogenic potential of Helicobacter pullorum: Possible role for the Type VI secretion system', Helicobacter, 18, pp. 102 - 111,
    Journal articles | 2013
    Tay AP; Kaakoush NO; Deshpande NP; Chen Z; Mitchell H; Wilkins MR, 2013, 'Genome sequence of Campylobacter showae UNSWCD, isolated from a patient with Crohn's disease', Genome Announcements, 1,
    Journal articles | 2012
    Burgos-Portugal J; Kaakoush NO; Raftery MJ; Mitchell HM, 2012, 'Pathogenic potential of Campylobacter ureolyticus', Infection and Immunity, 80, pp. 883 - 890,
    Journal articles | 2012
    Burgos-Portugal JA; Kaakoush NO; Raftery MJ; Mitchell HM, 2012, 'Pathogenic potential of Campylobacter ureolyticus', Infection and Immunity, 80, pp. 883 - 890,
    Journal articles | 2012
    Castano-Rodriguez N; Kaakoush NO; Pardo AL; Schmidt H-MA; Ha DM; Goh K-L; Fock KM; Sutton P; Forman D; Mitchell HM, 2012, 'Genetic polymorphisms involved in the toll-like receptor signaling pathway and Helicobacter pylori-related gastric cancer: a case-control study and meta-analysis', JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, 27, pp. 11 - 11,
    Journal articles | 2012
    Castano-Rodriguez N; Kaakoush NO; Pardo AL; Schmidt H-MA; Ha DM; Sutton P; Goh K-L; Fock KM; Forman D; Mitchell HM, 2012, 'PAR-1 polymorphisms and risk of gastric cancer in a Chinese population', JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, 27, pp. 11 - 11,
    Journal articles | 2012
    Castano-Rodriguez N; Kaakoush NO; Schmidt HA; Goh K; Fock KM; Sutton P; Chionh Y; Mitchell HM, 2012, 'PAR-1 polymorphisms and risk of Helicobacter pylori-related gastric cancer in a Chinese population', Anticancer Research, 32, pp. 3715 - 3721,
    Journal articles | 2012
    Gunaletchumy SP; Teh X; Khosravi Y; Chua EG; Kavitha T; Ramli NS; Mason JN; Lee HT; Alias H; Zaidan NZ; Tay LC; Rudd S; Mitchell HM; Kaakoush NO; Loke MF; Goh K-L; Vadivelu J, 2012, 'Draft genome sequences of Helicobacter pylori isolated from Malaysia, cultured from patients with functional dyspepsia and gastric cancer', Journal of Bacteriology, 194, pp. 5695 - 5696,
    Journal articles | 2012
    Kaakoush NO; Huinao KD; Leach ST; Lemberg DA; Dowd S; Mitchell HM; Day AS, 2012, 'Microbial dysbiosis in pediatric patients with Crohn's disease.', Journal of Clinical Microbiology, 50, pp. 3258 - 3266,
    Journal articles | 2012
    Kaakoush NO; Mitchell HM, 2012, 'Campylobacter concisus - a new player in intestinal disease', Frontiers in Cellular and Infection Microbiology, 2, pp. 4 - 4,
    Journal articles | 2012
    Lavrencic P; Kaakoush NO; Huinao KD; Kain N; Mitchell HM, 2012, 'Investigation of motility and biofilm formation by intestinal Campylobacter concisus strains.', Gut Pathogens, 4, pp. 22
    Journal articles | 2011
    Deshpande NP; Kaakoush NO; Mitchell HM; Janitz K; Raftery MJ; Li SS; Wilkins MR, 2011, 'Sequencing and validation of the genome of a Campylobacter concisus reveals intra-species diversity', PLoS ONE, 6, pp. e22170,
    Journal articles | 2011
    Every AL; Lynne S; Castano-Rodriguez N; Wei L; Helen W; Janet LKW; Agnieszka S; Barry JM; Kaakoush NO; Mitchell HM; Sutton P; Castano Rodriguez N, 2011, 'Did transmission of Helicobacter pylori from humans cause a disease outbreak in a colony of Stripe-faced Dunnarts (Sminthopsis macroura)?', Veterinary Research, 42, pp. 26,
    Journal articles | 2011
    Kaakoush N; Holmes J; Octavia S; Man S; Zhang L; Castaño-Rodríguez N; Day A; Leach S; Lemberg D; Dutt S; Stormon M; O'Loughlin E; Magoffin A; Mitchell H, 2011, 'Detection of Helicobacteraceae in Intestinal Biopsies of Children with Crohn's Disease', Gastroenterological Endoscopy, 53, pp. 99,
    Journal articles | 2011
    Kaakoush NO; Deshpande N; Wilkins MR; Raftery MJ; Janitz K; Mitchell HM, 2011, 'Comparative analyses of Campylobacter concisusstrains reveal the genome of the reference strain BAA-1457 is not representative of the species.', Gut Pathogens, 3, pp. 15,
    Journal articles | 2011
    Kaakoush NO; Deshpande NP; Wilkins MR; Tan C; Burgos-Portugal J; Raftery MJ; Day AS; Lemberg DA; Mitchell HM, 2011, 'The pathogenic potential of campylobacter concisus strains associated with chronic intestinal diseases', PLoS One, 6, pp. e29045,
    Journal articles | 2011
    Kovach Z; Kaakoush NO; Lamb S; Zhang L; Raftery MJ; Mitchell HM; Lamb S, 2011, 'Immunoreactive proteins of Campylobacter concisus, an emergent intestinal pathogen.', FEMS Immunology and Medical Microbiology, 63, pp. 387 - 396,
    Journal articles | 2011
    Mahendran V; Riordan S; Grimm M; Tran TAT; Major J; Kaakoush NO; Mitchell HM; Zhang L, 2011, 'Prevalence of Campylobacter species in adult Crohn's disease and the preferential colonization sites of Campylobacter species in the human intestine', PLoS ONE, 6, pp. 1 - 7,
    Journal articles | 2011
    Man S; Kaakoush NO; Mitchell HM, 2011, 'The role of bacteria and pattern recognition receptors in Crohn's Disease', Nature Reviews Gastroenterology and Hepatology, 8, pp. 152 - 168
    Journal articles | 2011
    Man SM; Kaakoush NO; Mitchell HM, 2011, 'Erratum: The role of bacteria and pattern-recognition receptors in Crohn's disease (Nature Reviews Gastroenterology and Hepatology (2011) 8 (152-168) DOI:10.1038/nrgastro.2011.3)', Nature Reviews Gastroenterology and Hepatology, 8, pp. 1,
    Journal articles | 2010
    Ford JL; Kaakoush NO; Mendz GL, 2010, 'Phosphonate Metabolism in Helicobacter pylori', Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology, 97, pp. 51 - 60
    Journal articles | 2010
    Kaakoush NO; Holmes J; Octavia S; Man S; Zhang L; Castano-Rodriguez N; Day AS; Leach ST; Lemberg DA; Dutt S; Stormon M; O'Loughlin EV; Magoffin A; Mitchell HM, 2010, 'Detection of Helicobacteraceae in intestinal biopsies of children with Crohn's disease', Helicobacter, 15, pp. 549 - 557
    Journal articles | 2010
    Kaakoush NO; Man SM; Lamb S; Raftery MJ; Wilkins MR; Kovach Z; Mitchell HM, 2010, 'The secretome of Campylobacter concisus.', FEBS Journal, 277, pp. 1606 - 1617
    Journal articles | 2010
    Man S; Kaakoush NO; Leach ST; Nahidi L; Lu HK; Norman J; Day AS; Zhang L; Mitchell HM, 2010, 'Host attachment, invasion and stimulation of proinflammatory cytokines by Campylobacter concisus and other non-Campylobacter jejuni Campylobacter species', Journal of Infectious Diseases, 202, pp. 1855 - 1865
    Journal articles | 2010
    Man S; Kaakoush NO; Octavia S; Mitchell HM, 2010, 'The internal transcribed spacer region: A new tool in species differentiation and delineation of systematic relationships within the Campylobacter genus', Applied and Environmental Microbiology, 76, pp. 3071 - 3081,
    Journal articles | 2010
    Schmidt HM; Andres S; Nilsson C; Kovach Z; Kaakoush NO; Engstrand L; Goh K-L; Fock K; Forman D; Mitchell HM, 2010, 'The cag PAI is intact and functional but HP0521 varies significantly in Helicobacter pylori isolates from Malaysia and Singapore', European Journal of Clinical Microbiology and Infectious Diseases, 29, pp. 439 - 451
    Journal articles | 2009
    Hartley L; Kaakoush NO; Ford JL; Korolik V; Mendz GL, 2009, 'Characterisation of Campylobacter jejuni genes potentially involved in phosphonate degradation.', Gut Pathogens, 1, pp. 1 - 9,
    Journal articles | 2009
    Kaakoush NO; Asencio C; Megraud F; Mendz GL, 2009, 'A redox basis for metronidazole resistance in helicobacter pylori', Antimicrobial Agents and Chemotherapy, 53, pp. 1884 - 1891,
    Journal articles | 2009
    Kaakoush NO; Baar C; Fox E; MacKichan J; Schuster SC; Mendz GL, 2009, 'Insights into the molecular basis of the microaerophily of three Campylobacterales: a comparative study', Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology, 96, pp. 545 - 557
    Journal articles | 2009
    Kaakoush NO; Mendz GL, 2009, 'Inhibition of disulfide reductases as a therapeutic strategy', Current Enzyme Inhibition, 5, pp. 117 - 133,
    Journal articles | 2009
    Schmidt HA; Andras S; Kaakoush NO; Engstrand L; Eriksson L; Goh K-L; Fock KM; Hilmi I; Dhamodaran S; Forman D; Mitchell HM, 2009, 'The prevalence of the duodenal ulcer promoting gene (dupA) in Helicobacter pylori isolates varies by ethnic group and is not universally associated with disease development: a case-control study.', Gut Pathogens, 1, pp. 1 - 5
    Journal articles | 2008
    Kaakoush NO; Raftery MJ; Mendz GL, 2008, 'Molecular response of campylobacter jejuni to cadmium stress', FEBS Journal, 275, pp. 5021 - 5033
    Journal articles | 2007
    Kaakoush NO; Kovach Z; Mendz GL, 2007, 'Potential role of thiol : disulfide oxidoreductases in the pathogenesis of Helicobacter pylori', FEMS Immunology and Medical Microbiology, 50, pp. 177 - 183
    Journal articles | 2007
    Kaakoush NO; Miller W; De Reuse H; Mendz GL, 2007, 'Oxygen requirement and tolerance of Campylobacter jejuni', Research in Microbiology, 158, pp. 644 - 650
    Journal articles | 2007
    Kaakoush NO; Raftery M; Mendz GL, 2007, 'Molecular responses of Campylobacter jejuni to cadmium stress', ZOONOSES AND PUBLIC HEALTH, 54, pp. 61 - 61,
    Journal articles | 2007
    Kaakoush NO; Sterzenbach T; Miller W; Suerbaum S; Mendz GL, 2007, 'Identification of disulfide reductases in Campylobacterales: a bioinformatics investigation', Antonie van Leeuwenhoek International Journal of General and Molecular Microbiology, 92, pp. 429 - 441
    Journal articles | 2006
    Bury-Mone S; Kaakoush NO; Asencio C; Megraud F; Thibonnier M; De Reuse H; Mendz GL, 2006, 'Is Helicobacter pylori a true microaerophile?', Helicobacter, 11, pp. 296 - 303
    Journal articles | 2005
    Kaakoush NO; Mendz GL, 2005, 'Helicobacter pylori disulphide reductases: role in metronidazole reduction', FEMS Immunology and Medical Microbiology, 44, pp. 137 - 142
  • Preprints | 2024
    Fan Y; Ni M; Aggarwala V; Mead EA; Ksiezarek M; Kamm MA; Borody T; Paramsothy S; Kaakoush NO; Grinspan A; Faith JJ; Fang G, 2024, Long-read metagenomics empowers precise tracking of bacterial strains and their genomic changes after fecal microbiota transplantation,
    Preprints | 2024
    Hasebe K; Kendig M; Kaakoush N; Tajaddini A; Westbrook F; Morris M, 2024, Impact of maternal obesogenic diet on maternal and offspring microbiome development,
    Preprints | 2022
    Chen-Liaw A; Aggarwala V; Mogno I; Haifer C; Li Z; Eggers J; Helmus D; Hart A; Wehkamp J; Lamousé-Smith ESN; Kerby RL; Rey FE; Colombel JF; Kamm MA; Borody TJ; Grinspan A; Paramsothy S; Kaakoush NO; Dubinsky MC; Faith JJ, 2022, Gut microbiota bacterial strain richness is species specific and limits therapeutic engraftment,
    Conference Abstracts | 2022
    Leong R; Haifer C; Kaakoush N; Chetwood J; Pudipeddi A; Paramsothy S, 2022, 'Baseline endoscopic activity and concomitant medications in the prediction of oral fecal microbiota therapeutic efficacy in mild-moderate ulcerative colitis: Lyophilised Oral Faecal Microbiota Transplantation for Ulcerative Colitis (LOTUS) study', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 37, pp. 170 - 171,
    Conference Abstracts | 2022
    Luu LD; Singh H; Castano-Rodriguez N; Leach ST; Stephen R; Tedla N; Krishnan U; Kaakoush NO, 2022, 'ENRICHMENT OF PREVOTELLA IS A CONSISTENT SIGNATURE IN THE METAPLASTIC ESOPHAGUS IN CHILDREN AND ADULTS', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, Vol. 162, pp. S833 - S833,
    Conference Abstracts | 2022
    Luu LD; Singh H; Castaño-Rodríguez N; Leach ST; Stephen R; Tedla N; Krishnan U; Kaakoush NO, 2022, 'Mo1603: ENRICHMENT OF PREVOTELLA IS A CONSISTENT SIGNATURE IN THE METAPLASTIC ESOPHAGUS IN CHILDREN AND ADULTS', in Gastroenterology, Elsevier BV, Vol. 162, pp. S - 833,
    Conference Papers | 2022
    Luu LDW; Popple G; Tsang SPW; Vinasco K; Hilmi I; Ng RT; Chew KS; Wong SY; Riordan S; Lee WS; Mitchell HM; Kaakoush NO; Castaño-Rodríguez N, 2022, 'Genetic variants involved in innate immunity modulate the risk of inflammatory bowel diseases in an understudied Malaysian population', in Journal of Gastroenterology and Hepatology (Australia), pp. 342 - 351,
    Conference Abstracts | 2022
    Simovic I; Kaakoush N; Rodriguez NC, 2022, 'Autophagy influences inflammation in Helicobacter pylori-related gastric carcinogenesis', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 37, pp. 34 - 34,
    Conference Abstracts | 2022
    Wark G; Kaakoush N; Samocha-Bonet D; Ghaly S; Danta M, 2022, 'Body mass index is associated with reduced stool diversity in patients with inflammatory bowel disease: Key dietary considerations in management', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 37, pp. 103 - 103,
    Conference Abstracts | 2022
    Wark G; Kaakoush N; Samocha-Bonet D; Ghaly S; Danta M, 2022, 'Fasting insulin level correlates with microbial diversity in patients with inflammatory bowel disease', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 37, pp. 103 - 104,
    Conference Abstracts | 2021
    Haifer C; Saikal A; Paramsothy S; Borody TJ; Ghaly S; Kaakoush NO; Leong RW, 2021, 'LYOPHILIZED ORALLY ADMINISTERED FECAL MICROBIOTA TRANSPLANTATION IN THE MANAGEMENT OF ULCERATIVE COLITIS (LOTUS STUDY) - RESULTS FROM THE INDUCTION PHASE OF A RANDOMIZED CONTROLLED TRIAL', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, ELECTR NETWORK, Vol. 160, pp. S135 - S135, presented at Society-for-Surgery-of-the-Alimentary-Tract Annual Meeting at Digestive Disease Week (DDW), ELECTR NETWORK, 21 May 2021 - 23 May 2021,
    Preprints | 2021
    Hasebe K; Kendig M; Kaakoush N; Tajaddini A; Westbrook F; Morris M, 2021, The Influence of Maternal Unhealthy Diet On Maturation of Offspring Gut Microbiota in Rat,
    Conference Abstracts | 2021
    Santiago F; Paramsothy S; Deshpande N; Tedla N; Kaakoush N, 2021, 'A member of the gut microbiota associated with failure of therapy in patients with ulcerative colitis produces an immunoglobulin A degrading protease', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 36, pp. 87 - 88,
    Conference Abstracts | 2021
    Vinasco-Pacheco K; Mitchell H; Kaakoush NO; Castano-Rodriguez N, 2021, 'Does microbial lactate play a role in gastric adenocarcinoma?', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 36, pp. 13 - 14,
    Preprints | 2020
    Faith JJ; Chen-Liaw A; Aggarwala V; Kaakoush NO; Borody TJ; Mitchell H; Kamm MA; Paramsothy S; Snitkin ES; Mogno I, 2020, Strain population structure varies widely across bacterial species and predicts strain colonization in unrelated individuals,
    Conference Abstracts | 2020
    Haifer C; Saikal A; Paramsothy S; Borody TJ; Ghaly S; Kaakoush NO; Leong RW, 2020, 'Lyophilised Oral Faecal Microbiota Transplantation in the Management of Ulcerative Colitis (LOTUS Study): Results from the induction phase of a randomized controlled trial', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 35, pp. 116 - 117,
    Conference Papers | 2020
    Vinasco-Pacheco K; Mitchell H; Kaakoush N; Castano-Rodriguez N, 2020, 'The role of lactate in gastric carcinogenesis', in HELICOBACTER, WILEY, ELECTR NETWORK, pp. 56 - 57, presented at 33rd International Workshop on Helicobacter and Microbiota in Inflammation and Cancer, ELECTR NETWORK, 12 September 2020,
    Conference Abstracts | 2020
    Vinasco-Pacheco K; Mitchell H; Kaakoush N; Castano-Rodriguez N, 2020, 'The role of lactate in gastric carcinogenesis', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 35, pp. 158 - 158,
    Conference Abstracts | 2019
    Beilharz JE; Kaakoush NO; Maniam J; Morris MJ, 2019, 'Short-term exposure to energy-matched diets enriched in fat or sugar differentially affects memory, gut microbiota and markers of brain inflammation and plasticity', in Obesity Research & Clinical Practice, Elsevier BV, Vol. 13, pp. 17 - 18,
    Preprints | 2019
    Britton GJ; Contijoch EJ; Spindler MP; Aggarwala V; Bongers G; Mateo LS; Baltus A; Das A; Gevers D; Borody TJ; Kaakoush NO; Kamm MA; Mitchell H; Paramsothy S; Clemente JC; Colombel J-F; Dubinsky MC; Grinspan A; Faith JJ, 2019, Defined microbiota transplant restores Th17/RORγt+ regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas,
    Conference Abstracts | 2019
    Leigh S-J; Kaakoush NO; Westbrook F; Morris MJ, 2019, 'Cafeteria diet-induced cognitive impairment is prevented by oral minocycline in association with changes in the microbiome', in Obesity Research & Clinical Practice, Elsevier BV, Vol. 13, pp. 249 - 250,
    Conference Papers | 2019
    Rodriguez NC; Goswami AB; Simovic I; Mitchell HM; Kaakoush NO; Fock KM; Goh KL; Porras-Hurtado GL; Cardona-Deazza JL; Montoya-Martinez JJ; Cadavid-Velez AJ; Toro-Hidalgo HW; Cobo-Alvarado AR; Hincapie-Rincon ODS, 2019, 'UNDERSTANDING THE TUMOUR-PROMOTING FUNCTIONS OF AUTOPHAGY IN GASTRIC CARCINOGENESIS', in HELICOBACTER, WILEY, AUSTRIA, Innsbruck, presented at 32nd International Workshop on Helicobacter and Microbiota in Inflammation and Cancer (EHMSG), AUSTRIA, Innsbruck, 05 September 2019 - 07 September 2019,
    Conference Papers | 2018
    Ong KL; Hui N; Januszewski AS; Kaakoush NO; Xu A; Fayyad R; DeMicco DA; Jenkins AJ; Keech AC; Waters DD; Barter PJ; Rye K-A, 2018, 'Relationship of FGF21 Levels With Major Cardiovascular Events in Patients Treated With Atorvastatin (From the Treating to New Targets [TNT] Study).', in CIRCULATION, LIPPINCOTT WILLIAMS & WILKINS,
    Conference Abstracts | 2018
    Paramsothy S; Kamm M; Nielsen S; Deshpande N; Faith J; Clemente J; Paramsothy R; Walsh A; van den Bogaerde J; Samuel D; Leong R; Connor S; Ng W; Lin E; Wilkins M; Colombel J-F; Borody T; Mitchell H; Kaakoush N, 2018, 'In faecal microbiota transplantation (FMT) for ulcerative colitis, fusobacterium is associated with lack of remission, while metabolic shifts to starch degradation and short-chain fatty acid production are associated with remission (FOCUS study)', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, Vol. 12, pp. S13 - S14
    Conference Papers | 2018
    Paramsothy S; Kamm MA; Nielsen S; Deshpande N; Faith J; Clemente JC; Paramsothy R; Walsh A; van den Bogaerde J; Samuel D; Leong RW; Connor SJ; Ng WSW; Lin E; Wilkins M; Colombel JF; Borody TJ; Mitchell HM; Kaakoush NO, 2018, 'IN FECAL MICROBIOTA TRANSPLANTATION (FMT) FOR ULCERATIVE COLITIS, FUSOBACTERIUM IS ASSOCIATED WITH LACK OF REMISSION, WHILE METABOLIC SHIFTS TO STARCH DEGRADATION AND SHORT CHAIN FATTY ACID PRODUCTION ARE ASSOCIATED WITH REMISSION - RESULTS FROM THE RANDOMIZED CONTROLLED FOCUS STUDY', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, DC, Washington, pp. S35 - S35, presented at Annual Meeting of the American-Society-for-Gastrointestinal-Endoscopy / Digestive Disease Week, DC, Washington, 02 June 2018 - 05 June 2018,
    Conference Abstracts | 2017
    Castano-Rodriguez N; Fock K; Goh K; Mitchell HM; Kaakoush NO, 2017, 'The role of gastric dysbiosis in gastric carcinogenesis', in HELICOBACTER, WILEY, FRANCE, Bordeaux, Vol. 22, presented at 30th International Workshop of the European-Helicobacter-and-Microbiota-Study-Group (EHMSG) on Helicobacter and Microbiota in Inflammation and Cancer, FRANCE, Bordeaux, 07 September 2017 - 09 September 2017,
    Conference Abstracts | 2017
    Castano-Rodriguez N; Fock KM; Goh KL; Mitchell HM; Kaakoush NO, 2017, 'The role of gastric dysbiosis in gastric carcinogenesis', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, Vol. 32, pp. 56 - 56,
    Conference Papers | 2017
    Castano-Rodriguez N; Popple G; Kaakoush NO; Lee W; Mitchell HM, 2017, 'The role of the intestinal microbiota in the aetiology of inflammatory bowel diseases and the impact of Helicobacter pylori infection', in HELICOBACTER, WILEY, FRANCE, Bordeaux, presented at 30th International Workshop of the European-Helicobacter-and-Microbiota-Study-Group (EHMSG) on Helicobacter and Microbiota in Inflammation and Cancer, FRANCE, Bordeaux, 07 September 2017 - 09 September 2017,
    Conference Papers | 2017
    Castano-Rodriguez N; Popple G; Kaakoush NO; Lee WS; Mitchell HM, 2017, 'The role of the intestinal microbiota in the etiology of inflammatory bowel disease and the impact of Helicobacter pylori infection', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, pp. 116 - 116,
    Conference Papers | 2017
    Kaakoush NO; Lecomte V; Maloney CA; Morris MJ, 2017, 'Chronic exposure to an obesogenic diet alters host gene expression and microbiome in the esophagus', in HELICOBACTER, WILEY, FRANCE, Bordeaux, presented at 30th International Workshop of the European-Helicobacter-and-Microbiota-Study-Group (EHMSG) on Helicobacter and Microbiota in Inflammation and Cancer, FRANCE, Bordeaux, 07 September 2017 - 09 September 2017,
    Conference Abstracts | 2017
    Paramsothy S; Paramsothy R; Kamm M; Kaakoush N; Mitchell H; Rubin D; Castano-Rodriguez N, 2017, 'Faecal microbiota transplantation for inflammatory bowel disease: a systematic review and meta-analysis', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, Vol. 11, pp. S380 - S381,
    Conference Abstracts | 2017
    Paramsothy S; Paramsothy R; Kamm MA; Kaakoush NO; Mitchell HM; Rubin DT; Castaño-Rodríguez N, 2017, 'Tu1920 Faecal Microbiota Transplantation for Inflammatory Bowel Disease: A Systematic Review and Meta-Analysis', in Gastroenterology, Elsevier, IL, Chicago, Vol. 152, pp. s1007, presented at Digestive Disease Week (DDW), IL, Chicago, 06 May 2017 - 09 May 2017,
    Conference Posters | 2016
    Deshpande N; Wilkins M; Mitchell H; Kaakoush N, 2016, 'Deciphering the role of Campylobacter concisus in host pathogenesis using multi-omics techniques', Charles Perkins Centre, University of Sydney, presented at SBRS 2016, Charles Perkins Centre, University of Sydney, 22 July 2016 - 22 July 2016
    Conference Posters | 2016
    Deshpande N; Wilkins M; Mitchell H; Kaakoush NO, 2016, 'SBRS 2016', Charles Perkins Centre, University of Sydney, presented at SBRS 2016, Charles Perkins Centre, University of Sydney, 22 July 2016 - 22 July 2016,
    Conference Papers | 2016
    Paramsothy S; Kaakoush NO; Kamm M; Faith J; Clemente JC; Walsh A; van den Bogaerde J; Samuel D; Leong R; Connor S; Ng W; Paramsothy R; Lin E; Colombel J; Borody T; Mitchell HM, 2016, 'Effect on the intestinal microbiota and clinical outcome of faecal microbiota transplantation in patients with UC', in HELICOBACTER, WILEY-BLACKWELL, GERMANY, Magdeburg, pp. 72 - 72, presented at 29th International Workshop on Helicobacter and Microbiota in Inflammation and Cancer, GERMANY, Magdeburg, 15 September 2016 - 17 September 2016,
    Conference Abstracts | 2016
    Paramsothy S; Kaakoush NO; Kamm MA; Faith JJ; Clemente JC; Walsh AJ; Van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Paramsothy R; Lin E; Colombel JF; Borody TJ; Mitchell HM, 2016, 'Faecal microbiota transplantation (FMT) in ulcerative colitis is associated with specific bacterial changes: stool and colonic mucosa 16S microbiota analysis from the randomised controlled FOCUS study', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY-BLACKWELL, Vol. 31, pp. 125 - 126,
    Conference Abstracts | 2016
    Paramsothy S; Kamm M; Walsh A; van den Bogaerde J; Samuel D; Leong R; Connor S; Ng W; Paramsothy R; Kaakoush N; Mitchell H; Xuan W; Lin E; Borody T, 2016, 'Multi-donor intense faecal microbiota transplantation is an effective treatment for resistant ulcerative colitis: a randomised placebo-controlled trial', in JOURNAL OF CROHNS & COLITIS, OXFORD UNIV PRESS, Vol. 10, pp. S14 - S14,
    Conference Papers | 2016
    Paramsothy S; Kamm MA; Walsh A; van den Bogaerde J; Samuel D; Leong RW; Connor SJ; Ng WSW; Paramsothy R; Kaakoush N; Mitchell HM; Xuan W; Lin E; Borody T, 2016, 'Multi Donor Intense Faecal Microbiota Transplantation is an Effective Treatment for Resistant Ulcerative Colitis: A Randomised Placebo-Controlled Trial', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, pp. S122 - S123, presented at Digestive Disease Week (DDW), CA, San Diego, 20 May 2016 - 24 May 2016,
    Conference Abstracts | 2016
    Paramsothy S; Kamm MA; Walsh AJ; Van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Paramsothy R; Kaakoush N; Mitchell HM; Xuan W; Lin E; Borody TJ, 2016, 'Multi donor intense faecal microbiota transplantation is an effective treatment for resistant ulcerative colitis: a randomised placebocontrolled trial and microbiota analysis', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY-BLACKWELL, Vol. 31, pp. 143 - 143,
    Conference Abstracts | 2015
    Castano-Rodriguez N; Kaakoush NO; Vadivelu J; Lee WS; Mitchell HM, 2015, 'HELICOBACTER PYLORI INFECTION IS A CONSISTENT PROTECTIVE FACTOR AGAINST INFLAMMATORY BOWEL DISEASES', in HELICOBACTER, WILEY-BLACKWELL, CYPRUS, Nicosia, Vol. 20, pp. 84 - 84, presented at European-Helicobacter-Study-Group 28th International Workshop on Helicobacter and Microbiota in Inflammation and Cancer, CYPRUS, Nicosia, 24 September 2015 - 26 September 2015,
    Conference Abstracts | 2015
    Mendz GL; Quinlivan JA; Kaakoush NO, 2015, 'The female genital tract microbiome at delivery', in BJOG-AN INTERNATIONAL JOURNAL OF OBSTETRICS AND GYNAECOLOGY, WILEY-BLACKWELL, Vol. 122, pp. 290 - 290,
    Conference Presentations | 2015
    Paramsothy S; Walsh A; Borody T; Samuel D; Van den Bogaerde J; Leong R; Connor S; Ng W; Mitchell H; Kaakoush N; Kamm M, 2015, 'Gastroenterologist perceptions of faecal microbiota transplantation', Vol. 30, pp. 21 - 21,
    Conference Papers | 2014
    Kaakoush NO; Day AS; Leach ST; Lemberg DA; Nielsen S; Mitchell HM, 2014, 'The effect of exclusive enteral nutrition on the microbiota of newly diagnosed pediatric Crohn's disease patients', in JOURNAL OF CROHNS & COLITIS, ELSEVIER SCIENCE BV, pp. S395 - S396,
    Conference Papers | 2014
    Kaakoush NO; Sodhi N; Chenu JW; Cox JM; Riordan S; Mitchell HM, 2014, 'THE INTERPLAY BETWEEN HELICOBACTER AND CAMPYLOBACTER SPECIES AND OTHER GASTROINTESTINAL MICROBIOTA OF COMMERCIAL BROILER CHICKENS', in HELICOBACTER, WILEY-BLACKWELL, ITALY, Rome, pp. 158 - 158, presented at European-Helicobacter-Study-Group 27th International Workshop on Helicobacter and Microbiota in Chronic Digestive Inflammation and Gastric Cancer, ITALY, Rome, 11 September 2014 - 13 September 2014,
    Conference Presentations | 2014
    Mcmullen L; Mann SM; Kaakoush NO; Leach ST; Day AS; Mitchell HM; Lemberg DA, 2014, 'Impact of Campylobacter concisus on paediatric inflammatory bowel disease', Vol. 8, pp. S398 - S399,
    Conference Abstracts | 2014
    Mcmullen L; Mann SM; Kaakoush NO; Leach ST; Mitchell HM; Lemberg DA; Day AS, 2014, 'Impact of campylobacter concisus on pediatric inflammatory bowel disease', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY-BLACKWELL, Vol. 29, pp. 151 - 151,
    Conference Papers | 2014
    Paramsothy S; Borody T; Lin E; Finlayson S; Walsh A; Samuel D; van den Bogaerde J; Mitchell H; Kaakoush N; Kamm M, 2014, 'Obstacles to Donor Recruitment for Faecal Microbiota Transplantation: Experiences From the FOCUS Study', in AMERICAN JOURNAL OF GASTROENTEROLOGY, NATURE PUBLISHING GROUP, PA, Philadelphia, pp. S188 - S188, presented at 79th Annual Scientific Meeting of the American-College-of-Gastroenterology, PA, Philadelphia, 17 October 2014 - 22 October 2014,
    Conference Papers | 2014
    Rodriguez NC; Kaakoush N; Khean-Lee G; Ming FK; Mitchell H, 2014, 'PATTERN RECOGNITION RECEPTORS IN HELICOBACTER PYLORI-RELATED GASTRIC CANCER', in HELICOBACTER, WILEY-BLACKWELL, ITALY, Rome, pp. 85 - 85, presented at European-Helicobacter-Study-Group 27th International Workshop on Helicobacter and Microbiota in Chronic Digestive Inflammation and Gastric Cancer, ITALY, Rome, 11 September 2014 - 13 September 2014,
    Conference Posters | 2013
    Kaakoush NO; Mitchell H; Wilkins M; Deshpande N, 2013, 'Comparative genomics of eight Campylobacter concisus isolates provides insights into pathogenesis', presented at Lorne Genome Conference 2013, 17 February 2013 - 19 February 2013
    Conference Papers | 2013
    Rodriguez NC; Kaakoush NO; Goh K; Fock K; Forman D; Mitchell H, 2013, 'GENETIC POLYMORPHISMS AND EXPRESSION OF GENES INVOLVED IN THE NOD-LIKE RECEPTORS SIGNALLING PATHWAY AND HELICOBACTER PYLORI-RELATED GASTRIC CANCER', in HELICOBACTER, WILEY, SPAIN, Madrid, pp. 150 - 150, presented at 26th International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, SPAIN, Madrid, 12 September 2013 - 14 September 2013,
    Conference Papers | 2013
    Rodriguez NC; Kaakoush NO; Goh K; Fock K; Forman D; Mitchell H, 2013, 'THE ROLE OF AUTOPHAGY IN HELICOBACTER PYLORI-RELATED GASTRIC CANCER', in HELICOBACTER, WILEY, SPAIN, Madrid, pp. 150 - 150, presented at 26th International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, SPAIN, Madrid, 12 September 2013 - 14 September 2013,
    Conference Papers | 2012
    Kaakoush NO; Thomas T; Day AS; Leach ST; Lemberg D; Dowd S; Mitchell HM, 2012, 'MICROBIAL DYSBIOSIS IN PEDIATRIC PATIENTS WITH CROHN'S DISEASE', in HELICOBACTER, WILEY-BLACKWELL, SLOVENIA, Ljubljana, pp. 92 - 92, presented at 25th International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, SLOVENIA, Ljubljana, 13 September 2012 - 15 September 2012,
    Conference Papers | 2012
    Sirianni A; Kaakoush NO; Raftery M; Mitchell HM, 2012, 'HELICOBACTER PULLORUM - A POTENTIAL GASTROINTESTINAL PATHOGEN?', in HELICOBACTER, WILEY-BLACKWELL, SLOVENIA, Ljubljana, pp. 78 - 78, presented at 25th International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, SLOVENIA, Ljubljana, 13 September 2012 - 15 September 2012,
    Conference Papers | 2010
    Castano-Rodriguez N; Kaakoush NO; Schmidt H; Forman D; Goh K; Fock K; Sutton P; Mitchell HM, 2010, 'Host genetic polymorphisms and gastric cancer', in HELICOBACTER, WILEY-BLACKWELL PUBLISHING, INC, NETHERLANDS, Rotterdam, pp. 328 - 328, presented at 23rd International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, NETHERLANDS, Rotterdam, 16 September 2010 - 18 September 2010,
    Conference Abstracts | 2010
    Kaakoush NO; Holmes J; Octavia S; Man S; Zhang L; Castano-Rodriguez N; Day A; Leach ST; Lemberg DA; Dutt S; Storman M; O'Laughlin EV; Magoffin A; Mitchell HM, 2010, 'Do members of the Helicobacteraceae play a role in Crohn's disease?', in HELICOBACTER, WILEY-BLACKWELL PUBLISHING, INC, NETHERLANDS, Rotterdam, Vol. 15, pp. 315 - 315, presented at 23rd International Workshop on Helicobacter and Related Bacteria in Chronic Digestive Inflammation and Gastric Cancer, NETHERLANDS, Rotterdam, 16 September 2010 - 18 September 2010,
    Conference Abstracts | 2010
    Mitchell HM; Man SM; Leach S; Nahidi L; Norman J; Day AS; Zhang L; Tan S; Kaakoush NO, 2010, 'Campylobacter concisus: an emergent intestinal pathogen', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY-BLACKWELL PUBLISHING, INC, Vol. 25, pp. A82 - A82,
    Conference Abstracts | 2009
    Mitchell HM; Zhang L; Man S; Day AS; Kaakoush NO, 2009, 'Members of the Helicobacteraceae Reside in Intestinal Tract of Children and may be Associated with Crohn`s Disease', in Helicobacter, Blackwell Publishing Inc, Malden, MA, USA, Vol. 14, pp. 323 - 324, presented at The European Helicobacter Study Group, Porto, Portugal, 17 September 2009 - 19 September 2009,
    Conference Papers | 2009
    Schmidt HA; Mitchell HM; Kaakoush NO; Nilsson C; Kovach Z; Forman D; Fock K; Goh KE, 2009, 'H. pylori Virulence Determinants and Their Association with Ethnicity and Disease in a Multi-ethnic Country', in Helicobacter, Blackwell Publishing Inc, Malden, MA, USA, pp. 413 - 413, presented at The European Helicobacter Study Group, Porto, Portugal, 17 September 2009 - 19 September 2009,
    Conference Papers | 2008
    Kaakoush NO; Mendz GL, 2008, 'Responses of four Campylobacterales to cadmium stress', in Collery P; Maymard I; Theophanides T; Khassanova L; Collery T (eds.), METAL IONS IN BIOLOGY AND MEDICINE, VOL 10, JOHN LIBBEY EUROTEXT, Bastia, FRANCE, pp. 174 - 179, presented at METAL IONS IN BIOLOGY AND MEDICINE, VOL 10, Bastia, FRANCE,
    Conference Papers | 2007
    Kaakoush NO; Asencio C; Megraud F; Mendz GL, 2007, 'A redox basis for metronidazole resistance in Helicobacter pylori', in Helicobacter, Blackwell Publishing Inc, Malden, MA, USA
    Conference Papers | 2007
    Kaakoush NO; Raftery MJ; Mendz GL, 2007, 'Molecular responses of Campylobacter jejuni to cadmium stress', in Zoonoses and Public Health
    Conference Papers | 2006
    Kaakoush NO; Fox E; MacKichan J; Mendz GL, 2006, 'Molecular responses of Helicobacter pylori to changes in oxygen tension', in Helicobacter, Blackwell Publishing Inc, Malden, MA, USA, pp. 321 - 321, presented at 19th International Workshop on Helicobacter and Related Bacteric in Chronic Digestive Inflammation, Wroclaw, POLAND,
    Conference Papers | 2006
    Kaakoush NO; Mendz GL, 2006, 'Involvement of disulphide reductases in the response of Campylobacter jejuni to cadmium stress', in Alpoim MC; Morais PV (ed.), METAL IONS IN BIOLOGY AND MEDICINE, VOL 9, JOHN LIBBEY EUROTEXT, PORTUGAL, Lisbon, pp. 214 - +, presented at 9th International Symposium on Metal Ions in Biology and Medicine, PORTUGAL, Lisbon, 21 May 2006 - 24 May 2006,
    Conference Papers | 2005
    Kaakoush NO; Mendz GL, 2005, 'Disulphide reductases of campylobacterales: Are they involved in drug resistance and response to environmental stresses?', in HELICOBACTER, BLACKWELL PUBLISHING, DENMARK, Copenhagen, pp. 458 - 458, presented at 18th International Workshop on Gastrointestinal Pathology and Helicobactor, DENMARK, Copenhagen, 12 October 2005 - 14 October 2005,
    Preprints |
    Haifer C; Paramosthy S; Kaakoush NO; Saikal A; Ghaly S; Luu LDW; Borody TJ; Leong RW, Lyophilised Oral Faecal Microbiota Transplantation in Ulcerative Colitis - a Randomised Placebo-Controlled Trial,

Research Contribution

  • Role of the microbiome in health & disease (carcinogenesis and inflammatory bowel diseases)
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My Research Supervision

  • PhD
  • Masters
  • Honours