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Publications

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    1. Besharatifard M; Vafaee F, 2024, Artificial Intelligence Review, 57

    2. Alizadeh F; Jazayeriy H; Jazayeri O; Vafaee F, 2024, International Journal of Engineering, Transactions A: Basics, 37, pp. 412 - 424

    3. Thoms JAI; Koch FC; Raei A; Subramanian S; Wong JWH; Vafaee F; Pimanda JE, 2024, Nucleic Acids Research, 52, pp. D1131 - D1137

    1. Subramanian S; Thoms JAI; Huang Y; Cornejo Paramo CP; Koch FC; Jacquelin S; Shen S; Song E; Joshi S; Brownlee CP; Woll PS; Chacon-Fajardo D; Beck D; Curtis DJ; Yehson K; Antonenas V; O'Brien T; Trickett A; Powell JA; Lewis ID; Pitson SM; Gandhi MK; Lane SW; Vafaee F; Wong E; Gottgens B; Rokny H; Wong JWH; Pimanda JE, Blood

    2. Choi WWY; Sánchez C; Li JJ; Dinarvand M; Adomat H; Ghaffari M; Khoja L; Vafaee F; Joshua AM; Chi KN; Guns EST; Hosseini-Beheshti E, Journal of Cancer Research and Clinical Oncology, 149, pp. 4701 - 4717

    3. Zandavi SM; Liu D; Chung V; Anaissi A; Vafaee F, Artificial Intelligence Review, 56, pp. 7263 - 7278

    4. Safari F; Kehelpannala C; Safarchi A; Batarseh AM; Vafaee F, Cancers, 15, pp. 2780 - 2780

    5. Ahmadzada T; Vijayan A; Vafaee F; Azimi A; Reid G; Clarke S; Kao S; Grau GE; Hosseini-Beheshti E, Cancers, 15, pp. 2364 - 2364

    6. Mandal A; Priyam S; Chan HH; Gouveia BM; Guitera P; Song Y; Baker MAB; Vafaee F, Cancers, 15, pp. 1428 - 1428

    7. Khazaal A; Zandavi SM; Smolnikov A; Fatima S; Vafaee F, International Journal of Molecular Sciences, 24, pp. 4796 - 4796

    8. Gano C; Fatima S; Failes T; Arndt G; Sajinovic M; Mahns D; Saedisomeolia A; Coorssen J; Bucci J; DeSouza P; Vafaee F; Scott K, Frontiers in Nutrition

    9. Batarseh AM; Vafaee F; Hosseini-Beheshti E; Safarchi A; Chen A; Cohen A; Juillard A; Hunt NH; Mariani M; Mitchell T; Grau GER, International Journal of Molecular Sciences, 24, pp. 501 - 50

    10. Gunawan I; Vafaee F; Meijering E; Lock JG, Cell Reports Methods, pp. 100547 - 100547

    1. Vijayan A; Fatima S; Sowmya A; Vafaee F, Briefings in Bioinformatics, 23

    2. Zandavi SM; Koch FC; Vijayan A; Zanini F; Mora FV; Ortega DG; Vafaee F, Nucleic Acids Research, 50, pp. 5482 - 5492

    3. Fatima S; Ma Y; Safrachi A; Haider S; Spring KJ; Vafaee F; Scott KF; Roberts TL; Becker TM; de Souza P, Cancers, 14, pp. 1669 - 1669

    4. Qayyum A; Benzinou A; Razzak I; Mazher M; Nguyen TT; Puig D; Vafaee F, IEEE Journal of Biomedical and Health Informatics, pp. 1 - 9

    5. Dinarvand M; Koch FC; Mouiee DA; Vuong K; Vijayan A; Tanzim AF; Azad AKM; Penesyan A; Castaño-Rodríguez N; Vafaee F, Microbial Genomics, 8

    1. Safarchi A; Fatima S; Ayati Z; Vafaee F, Cell and Bioscience, 11

    2. Scott KF; Mann TJ; Fatima S; Sajinovic M; Razdan A; Kim RR; Cooper A; Roohullah A; Bryant KJ; Gamage KK; Harman DG; Vafaee F; Graham GG; Church WB; Russell PJ; Dong Q; de Souza P, Molecules, 26, pp. 7267 - 7267

    3. Zandavi SM; Rashidi TH; Vafaee F, IEEE Transactions on Cybernetics, pp. 1 - 13

    4. Koch FC; Sutton GJ; Voineagu I; Vafaee F, Briefings in Bioinformatics, 22

    5. Azad AKM; Dinarvand M; Nematollahi A; Swift J; Lutze-Mann L; Vafaee F, Briefings in Bioinformatics, 22

    6. Shahriari S; Hossein Rashidi T; Azad AKM; Vafaee F, F1000Research, 10, pp. 1110 - 1110

    7. Azad AKM; Fatima S; Capraro A; Waters SA; Vafaee F, Patterns, pp. 100325

    8. Capraro A; Wong S; Adhikari A; Allan K; Patel H; Zhong L; Raftery M; Jaffe A; Yeang M; Aggarwal A; Wu L; Pandzic E; Whan R; Turville S; Vittorio O; Bull R; Kaakoush N; Rawlinson W; Tedla N; Vafaee F; Waters S,

    1. Bayati M; Rabiee HR; Mehrbod M; Vafaee F; Ebrahimi D; Forrest ARR; Alinejad-Rokny H, Scientific Reports, 10, pp. 1286

    2. Dinarvand M; Spain MP; Vafaee F, Frontiers in Microbiology, 11

    3. Azad AKM; Fatima S; Vafaee F,

    4. Walsh K; Voineagu MA; Vafaee F; Voineagu I, Bioinformatics, 36, pp. 4805 - 4809

    5. Colvin EK; Howell VM; Mok SC; Samimi G; Vafaee F, Cancer Science, 111, pp. 1805 - 1817

    6. Ebrahimkhani S; Beadnall HN; Wang C; Suter CM; Barnett MH; Buckland ME; Vafaee F, Molecular Neurobiology, 57, pp. 1245 - 1258

    1. °Â´Ç²Ô²µÌýet al., PLoS ONE 2019

    2. ´¡³ú²¹»åÌýet al., arXiv. 2019

    3. µþ²¹²â²¹³Ù¾±Ìýet al. Scientific Reports, bioRxiv, 424960
    4. Deep Learning meets single-cell omics to personalise medicine.
      Fatemeh Vafaee and A. K. M. Azad, Briefings in Bioinformatics [under review]
    5. Prognostic utility of lncRNAs in ovarian cancer-associated fibroblasts.
      °ä´Ç²Ô±ô±¹¾±²ÔÌýet al., Cancers [under review]
    6. Global redox proteome and phosphoproteome analysis reveals widespread crosstalk and signal dysregulation induced by oxidative stress
      ³§³ÜÌýet al., Nature Communiations [under review]
    7. Serum exosome microRNAs predict multiple sclerosis disease activity after fingolimod treatment
      ·¡²ú°ù²¹³ó¾±³¾°ì³ó²¹²Ô¾±Ìýet al., Frontiers in Neurology [under review]

    1. ·¡²ú°ù²¹³ó¾±³¾°ì³ó²¹²Ô¾±Ìýet al., NPJ precision oncology, Nature; 2018

    2. ³Õ²¹´Ú²¹±ð±ðÌýet al., NPJ Syst Biol Appl. 2018 Jun 1;4:20

    3. °ä´Ç²Ô³Ù²¹±ô»å¾±Ìýet al., Artificial Intelligence Review. 2018; 1-28

    4. °ä³ó²¹³Ü»å³ó³Ü°ù¾±Ìýet al., Scientific reports. 2018; 8 (1), 1774

    5. ³Õ²¹´Ú²¹±ð±ðÌýet al., Encyclopedia Of Bioinformatics and Computational Biology, Reference Module in Life Sciences, Elsevier

    1. ³Õ²¹´Ú²¹±ð±ðÌýet al., Scientific Reports, Nature; 2017

    2. ·¡²ú°ù²¹³ó¾±³¾°ì³ó²¹²Ô¾±Ìýet al., Scientific Reports, Nature; 2017

    1. ³Õ²¹´Ú²¹±ð±ðÌýet al., PLoS One; 2016

    2. ³Õ²¹´Ú²¹±ð±ðÌýet al., Scientific Reports; 2016

    3. ±·¾±³¦´Ç±ô±ðÌýet al., Scientific Reports; 2016

    4. ¶Ù´Ç³¾²¹²Ô´Ç±¹²¹Ìýet al., PLoS One; 2016

    1. ¸é´Ç±ô±ô´ÇÌýet al., Alzheimer’s & Dementia; 2015

    1. °­´Ç³Ù±ô²â²¹°ùÌýet al., Nature Methods; 2014

    1. ³Õ²¹´Ú²¹±ð±ðÌýet al., BMC Systems Biolog; 2013

Team

A multidisciplinary team collaborating with health organizations, research groups, and industry partners nationally and internationally to drive positive societal impact.

Research

Collaborative AI research to advance biomedical frontiers from disease diagnosis and drug discovery to single-cell multi-omics, with a commitment to precision, reproducibility, interpretability, and trust.

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